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The students of FICS (funded and non-funded) are listed below. The list gives the family name and given name of the student, his/her research topic, and his/her supervisor(s). A link to the student's home page (if any) is given under the student's name, and a link to his/her poster (if any) is given under the topic of research.
Alcanzare Maria Michiko / Diffusion of particle clusters in a Lattice-Bolzmann fluid / Tapio Ala-Nissilä
Auvinen Sami / Multiscale modeling of TiO2 nanoparticles / Matti Alatalo
Berglund Mathias / Deep learning / Juha Karhunen
Chen Ping / A comprehensive platform for alternative splicing analysis on whole transcriptome data / Sampsa Hautaniemi
Chen Xi / Image matching and object recognition using local features / Erkki Oja, Markus Koskela
Cho KyungHyun / Learning Algorithms and Applications of Deep Probabilistic Models / Juha Karhunen, Alexander Ilin, Tapani Raiko
Eirola Emil / Causality and Ensemble Techniques for Environmental Modelling of the Baltic Sea / Olli Simula
Erkkilä Timo / Integration and analysis of genome-wide measurements in Computational Systems Biology / Harri Lähdesmäki, Olli Yli-Harja
Faisal Muhammad Ali / Search and modeling of relevant biomedical experiments / Samuel Kaski
Fang Chun / Dynamical systems with discrete Lyapunov functions / Mats Gyllenberg
Forma Jussi / Automatic and Data-driven Motion Correction with Stochastic Models of Positron Emission Tomography Data / Ulla Ruotsalainen, Keijo Ruohonen
Franke Kévin / Pattern transfer and electric-field induced magnetic domain formation in multiferroic heterostructures / Sebastiaan van Dijken
Gillberg Jussi / Multi-view and multi-task methods for genome-wide association analysis / Samuel Kaski
Glerean Enrico / PhD in Cognitive Science - Methods for the neuroscience of film and music / Jouko Lampinen
Hakkarainen Janne / Data assimilation methods with geophysical applications / Heikki Haario, Johanna Tamminen
Harhanen Lauri / Detection of localized phenomena in electromagnetic imaging / Rolf Stenberg, Nuutti Hyvönen
Heikkilä Oskari / Numerical Modeling of High Efficiency Light-Emitting Diodes / Jukka Tulkki
Heikkinen Miikka / Theoretical and numerical modelling of ultracold Fermi gases / Päivi Törmä
Javanainen Matti / Dynamics of lipoproteins and membrane proteins in crowded environments / Ilpo Vattulainen
Jääskinen Väinö / Bayesian learning of variable length Markov models and their generalizations / Jukka Corander
Karilainen Topi / Effects of nanomaterials on biological systems / Ilpo Vattulainen, Olli Laine
Karinen Sirkku / Computational methods give an integrated view to the genetic background of cancer / Sampsa Hautaniemi
Karonen Ilmari / Adaptive dynamics in spatially structured populations / Mats Gyllenberg
Kaszuba Karol / Molecular Dynamics Simulations of Membrane Proteins / Ilpo Vattulainen
Khan Suleiman Ali / Modelling Sparsely Sampled Time Series of Gene Regulatory Networks with application on Searching for Relevant Experiments / Samuel Kaski
Kiseleva Maria / Oscillations of Dynamical Systems Applied in Drilling: Analytical and Numerical Methods / Pekka Neittaanmäki, Gennady Leonov, Nikolay Kuznetsov
Kohonen Jukka / Bayesian methods in systems biology / Jukka Corander
Korhonen Lassi / Diffusion Wavelets / Keijo Ruotsalainen
Koskela Sonja / Probabilistic taxonomic classification methods for next generation sequencing data / Otso Ovaskainen
Koskinen Patrik / In silico gene prediction and annotation of genes from the genome of the Glanville fritillary butterfly / Liisa Holm
Langohr Laura / Link prediction in heterogeneous biological networks / Hannu Toivonen
Lehtikangas Ossi / Utilizing Fokker-Planck-Eddington approximations in optical tomography / Tanja Tarvainen, Jari Kaipio
Leinonen Matti / Stochastic Finite Element Methods for Electrial Impedance Tomography / Nuutti Hyvönen
Lijffijt Jefrey / Data mining methods for sequential data and corpus linguistics / Heikki Mannila, Terttu Nevalainen
Lipponen Antti / Process Tomography under Nonstationary Velocity Fields / Jari Kaipio
Liu Dong / Electrical impedance tomography imaging of vocal folds / Aku Seppänen
Liu Xiao-Li / Modeling the Malaria Disease / Mats Gyllenberg
Luostari Teemu / Non-polynomial modeling methods for acoustical and electromagnetic wave phenomena / Jari Kaipio, Tomi Huttunen, Peter Monk
Matilainen Arto / Solving the surface structure of complex metallic alloys using quantitative low-energy electron diffraction / Katariina Pussi, Matti Alatalo
Matculevich Svetlana / Fully reliable a posteriori error control for nonlinear evolutionary problems / Sergey Repin
Mozumder Meghdoot / Complete computational measurement model for diffuse optical tomography / Ville Kolehmainen
Müller Philipp / Estimation of Stochastic Volatility Models / Juho Kanniainen, Robert Piché
Mökkönen Harri / Numerical simulations of polymer escape problem / Tapio Ala-Nissilä
Numminen Elina / Mathematical models of evolution of pathogens in structured host populations / Mats Gyllenberg, Eva Kisdi
Nurminen Henri / Statistical estimation algorithms for positioning and navigation / Robert Piché
Nurmi Tuomas / Adaptive Dynamics in structured metapopulations / Mats Gyllenberg, Kalle Parvinen, Stefan Geritz
Nybo Kristian / Developing Computational Methods for Neuroscientific Study of Subjective Experience Using Music / Samuel Kaski
Ojanperä Ari / Nonadiabatic dynamics of nanostructures / Martti Puska, Lauri Lehtovaara, Ville Havu, Arkady Krasheninnikov
Oksanen Lauri / On inverse problems for the wave equation / Matti Lassas
Ondracek Petr / Dispersal in Structured Metapopulation / Mats Gyllenberg
Osmala Maria / Modelling the location and function of genetic regulatory elements by computational methods / Harri Lähdesmäki, Riitta Lahesmaa
Peltola Tomi / Computational methods in genetic epidemiology / Jouko Lampinen, Aki Vehtari
Pessia Alberto / Statistical models and inference algorithms for population genomics / Jukka Corander
Pöyry Sanja / Modelling of the cellular powerhouses: properties of mitochondrial membranes and proteins / Ilpo Vattulainen
Preoteasa Diana / / Mats Gyllenberg
Puuronen Jouni / Component analysis and inversion techniques / Aapo Hyvarinen
Quach Tri / Numerical methods and conformal geometry / Timo Eirola, Olavi Nevanlinna, Antti Rasila
Ruokokoski Emmi / Topological Defects in Dilute Bose-Einstein Condensates / Mikko Möttönen
Sandholm Niina / Computational systems biology applications in diabetes / Kimmo Kaski, Per-Henrik Groop, Ville-Petteri Mäkinen
Sattari Mahdieh / Numerical solution of Overdetermined PDEs / Jukka Tuomela
Shubin Mikhail / Bayesian learning of variable length Markov models and their generalizations / Jukka Corander
Sipola Tuomo / Spectral signature extraction from high-dimensional manifolds / Amir Averbuch, Tapani Ristaniemi
Sirén Jukka / Bayesian methods for modelling genetic population structure / Jukka Corander
Siro Topi / GPU computing in many-body quantum physics / Ari Harju
Seiskari Otto / Local electrical impedance tomography and matrix subspaces / Nuutti Hyvönen
Seppänen Anne / Climate Change and the ecology and evolution of the American pika / Kalle Parvinen
Silvola Minna / Computational Study of Spectral Properties of Piezoelectric Waveguides / Keijo Ruotsalainen, Sergey A. Nazarov
Solin Otto / Data mining of astronomical data / Esko Ukkonen, Lauri Haikala
Suvitaival Tommi / Machine learning for translational medicine / Samuel Kaski
Toivonen Jaakko / Mathematical modeling explaining patterns found in fossil data / Mats Gyllenberg, Mikael Fortelius, Stefan Geritz, Eva Kisdi
Topa Hande / Computational Modeling of Regulation of Alternative Splicing of Genes / Antti Honkela
Uusitalo Pauliina / The existence of trapped modes in cranked channels / Keijo Ruotsalainen
Virtanen Seppo / New machine learning methods for brain signal analysis under natural stimulation / Samuel Kaski, Arto Klami
Visuri Anne-Maria / Long-range interactions and energy transfer in ultracold Fermi gases / Päivi Törmä
Vuokko Niko / Testing the Significance of Patterns with Complex Null Hypotheses / Heikki Mannila
Weigang Helene / Evolution of dispersal as adaptations to heterogeneous environments / Mats Gyllenberg
Zeng Hong-Li / Infering interactions - applications to biological systems / Mikko Alava
Äijö Tarmo / Modeling molecular dynamics and interactions / Harri Lähdesmäki, Riitta Lahesmaa
Graduated doctors
2010 Lukk Margus / Construction of a global map of human gene expression : the process, tools and analysis / Esko Ukkonen
2010 Heikinheimo Hannes / Extending Data Mining Techniques for Frequent Pattern Discovery: Trees, Low-Entropy Sets, and Crossmining / Heikki Mannila
2010 Utz Margarete / Adaptive Dynamics in multi-dimensional trait spaces; applications to spatially explicit ecological systems / Eva Kisdi, Mats Gyllenberg
2010 Kollin Jussi / Computational methods for detecting large-scale chromosome rearrangements in SNP data / Heikki Mannila
2010 Lahti Leo / Data fusion in functional genomics / Samuel Kaski
2010 Mutshinda Mwanza Crispin / Bayesian analysis of community dynamics / Robert O'Hara
2010 Pitkänen Esa / Computational methods for reconstruction and analysis of genome-scale metabolic networks / Juho Rousu
2011 Smolander Olli-Pekka / Studies of gene expression dynamics in individual bacteria using stochastic models and fluorescence / Olli Yli-Harja, Matti Karp, Andre Ribeiro
2011 Mali Olli / Uncertain Data in Modelling / Pekka Neittaanmäki
2011 Sindhya Karthik / Guaranteed Convergence and Distribution in Evolutionary Multi-objective Optimization via Hybrid Approaches / Kaisa Miettinen
2011 Haimi Perttu / Methods and tools for mass spectrometric lipidome analyses / Pentti Somerharju
2011 Hintsanen Petteri / Studies on gene mapping and graph mining / Hannu Toivonen
2011 Kuznetsova Olga / Investigation of limit cycles of dynamical systems / Pekka Neittaanmäki
2011 Hiltunen Petri / Diffuse optical tomography / Jouko Lampinen
2011 Solonen Antti / Bayesian Tools for Parameter Estimation, Experimental Design and Process Optimization / Heikki Haario
2011 Kajala Jussi / Dynamics of low-dimensional Fermi gases / Päivi Törmä
2012 Parviainen Pekka / Structure learning in Bayesian networks / Mikko Koivisto, Heikki Mannila
2012 Sirén Jouni / Compressed Full-Text Indexes for Highly Repetitive Collections / Veli Mäkinen
2012 Hanhijärvi Sami / Multiple Hypothesis Testing in Data Mining / Heikki Mannila
2012 Salmela Elina / Population structure of Finns and utilizing it in gene mapping studies / Juha Kere, Lahermo, Savontaus
2012 Laakso Marko / Multivariate and integrative computational methods to analyze genome-wide genetic data in cancers / Sampsa Hautaniemi
2012 Ikonen Timo / Dynamics of Biopolymer Escape and Translocation / Tapio Ala-Nissila
2012 Huopaniemi Ilkka / Machine learning methods for integrating heterogeneous multisource data / Janne Nikkilä, Samuel Kaski
2012 Heinonen Markus / Computational methods for Small-molecule metabolism / Juho Rousu
2012 Vagaytsev Vladimir / Analytical-Numerical Nethods for Finding Hidden Oscillations in Dynamical Systems / Pekka Neittaanmäki, Gennady Leonov, Nikolay Kuznetsov
2012 Ta Xuan-Hung / Computational methods for predicting the protein-protein interactions / Liisa Holm
2012 Priklopil Tadeas / Sympatric speciation and adaptive dynamics / Eva Kisdi
2013 Hartikainen Jouni / New Methods for Bayesian Inference on Large-Scale Dynamic Systems / Jouko Lampinen
2013 Kandemir Melih / Models of User Interest for Proactive Augmented-Reality Information Retrieval / Samuel Kaski
2013 Ijäs Mari / Quantum transport in low-dimensional systems / Risto Nieminen, Ari Harju
